hey, it's good that you included a lot of details, thanks
As a general feedback, state main symptoms of your situation first, then describe the steps how you got there, lastly you can paste the logs. Additionally, it's far easier to deal with one problem per topic.
For example
Notes are marked as "encrypted" on mobile and cli (screenshot)
(desktop sync and e2ee status)
(cli sync and e2ee status)
(mobile sync and e2ee status)
[steps you've done to solve the problem]
Sync target
versions
OSes
Is there maybe a prompt in sync status to decrypt those notes?
similar topic