Internal md link import/export

I’d like to switch to Joplin for note taking and editing. My current setup uses a folder structure and relative markdown links to organize my information.
When importing my markdown folder all the internal links break and when exporting, the links created within Joplin are not converted back to relative links. Is there a way to keep links working both ways?
As I work together with people with different markdown editing setups I unfortunately need this to work in order to use Joplin.