How often does this actually happen? I also use Joplin with Avast antivirus and I use the Joplin sync service.
I rarely run into a problem with it trying to quarantine a markdown file Perhaps it is something that you are consistently putting in the markdown files other than text?
I think the issue is that there are a lot of security vulnerabilities being discovered recently due to the advancement of AI, and many companies are releasing more patches and improving their security. I'm guessing antivirus software have recently added new behavioural rules which flags Joplin's existing sync behaviour as a security risk, because several people have suddently been getting these alerts from their antivirus in the last couple of days
The alert ID says "HttpRequest". If your note does not actually contain some kind of code snippet could it be that it just contains a URL that is HTTP?
The alert says "was infected with malware" but the ID is marked [Susp]. Also I did not find any other vendor using this "HttpRequest" ID.
I did use Avast a while back when I had a Windows machine. I uninstalled it when I got the feeling that some of the alerts I was getting were spurious to say the least. Also you can call me cynical but for a Malware alert why is the main feature of the dialog a big, green, clickable "UPGRADE YOUR PROTECTION" button.
Thanks for pointing that out. I did another search using a different search engine and it seems that Avast, AVG (which is also Avast), and Norton have started flagging something in non-executable documentation markdown files as suspicious.
This GitHub post for another application suggests that for them it is possibly being triggered by finding an HTTP URL in the text of their GitHub README.md file.
The solution (on the linked post about Norton) is to set a directory exclusion on your antivirus for the relevant Joplin directory it raising as having a malware
Not sure exactly, because it is truncated on the screenshot of the Avast alert. Have a look in the quarantine and post the full path of the quarantined file here, as you won't want to set the exclusion too wide or narrow
This is definitely happening with Norton as well, starting late April (2026). Tried adding C:\Users\XXXX.config\joplin-desktop\tmp to Norton Scanning exempt folder list but still the file created by the backup routine ending in .MD was again quarantined - note the exact file name changes each time Backup runs. Then added *.md to scan exempt list and same problem. Have now added both folder and file to Norton real time protection exempt list. SUCCESS!!!