Thanks to #Winvan and #JackGruber for responding to my question. This is essentially what Evernote has done, in its new software iteration. All scanned items go to a default folder, and can be sorted to their final destination from there. It just requires a different workflow, that I will get used to. Rather than choosing the target folder up front, I now choose it after the scan is done, when I move it from the default folder to the destination folder. Same net amount of effort. The other matter, of the disappearing Folder structure, Evernote seems to have fixed in their first patch to the interface, so I think that was just a programming error that they fixed. I love the helpful character of this forum!
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